Keypoint MoSeq
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Exporting pose estimates
Automatic kappa scan
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Location-aware modeling
Temporal downsampling
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Keypoint MoSeq
Index
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Index
A
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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U
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W
A
add_3D_pose_to_fig() (in module keypoint_moseq.viz)
add_3D_pose_to_plotly_fig() (in module keypoint_moseq.viz)
apply_model() (in module keypoint_moseq.fitting)
C
check_config_validity() (in module keypoint_moseq.io)
check_nan_proportions() (in module keypoint_moseq.util)
check_video_paths() (in module keypoint_moseq.util)
crop_image() (in module keypoint_moseq.viz)
D
downsample_timepoints() (in module keypoint_moseq.util)
E
estimate_syllable_marginals() (in module keypoint_moseq.fitting)
expected_marginal_likelihoods() (in module keypoint_moseq.fitting)
extract_results() (in module keypoint_moseq.io)
F
filter_angle() (in module keypoint_moseq.util)
filter_centroids_headings() (in module keypoint_moseq.util)
filtered_derivative() (in module keypoint_moseq.util)
find_matching_videos() (in module keypoint_moseq.util)
fit_model() (in module keypoint_moseq.fitting)
format_data() (in module keypoint_moseq.util)
G
generate_config() (in module keypoint_moseq.io)
generate_grid_movies() (in module keypoint_moseq.viz)
generate_trajectory_plots() (in module keypoint_moseq.viz)
get_centroids_headings() (in module keypoint_moseq.util)
get_edges() (in module keypoint_moseq.util)
get_grid_movie_window_size() (in module keypoint_moseq.viz)
get_instance_trajectories() (in module keypoint_moseq.util)
get_limits() (in module keypoint_moseq.viz)
get_syllable_instances() (in module keypoint_moseq.util)
get_typical_trajectories() (in module keypoint_moseq.util)
grid_movie() (in module keypoint_moseq.viz)
H
hierarchical_clustering_order() (in module keypoint_moseq.viz)
I
init_model() (in module keypoint_moseq.fitting)
initialize_3D_plot() (in module keypoint_moseq.viz)
interpolate_along_axis() (in module keypoint_moseq.util)
interpolate_keypoints() (in module keypoint_moseq.util)
K
keypoint_moseq.calibration
module
keypoint_moseq.fitting
module
keypoint_moseq.io
module
keypoint_moseq.util
module
keypoint_moseq.viz
module
L
list_files_with_exts() (in module keypoint_moseq.util)
load_annotations() (in module keypoint_moseq.calibration)
load_checkpoint() (in module keypoint_moseq.io)
load_config() (in module keypoint_moseq.io)
load_hdf5() (in module keypoint_moseq.io)
load_keypoints() (in module keypoint_moseq.io)
load_pca() (in module keypoint_moseq.io)
load_results() (in module keypoint_moseq.io)
load_sampled_frames() (in module keypoint_moseq.calibration)
M
matplotlib_colormap_to_plotly() (in module keypoint_moseq.viz)
module
keypoint_moseq.calibration
keypoint_moseq.fitting
keypoint_moseq.io
keypoint_moseq.util
keypoint_moseq.viz
N
noise_calibration() (in module keypoint_moseq.calibration)
np_io() (in module keypoint_moseq.util)
O
overlay_keypoints_on_image() (in module keypoint_moseq.viz)
overlay_keypoints_on_video() (in module keypoint_moseq.viz)
P
pad_along_axis() (in module keypoint_moseq.util)
permute_cyclic() (in module keypoint_moseq.util)
plot_confusion_matrix() (in module keypoint_moseq.viz)
plot_duration_distribution() (in module keypoint_moseq.viz)
plot_eml_scores() (in module keypoint_moseq.viz)
plot_kappa_scan() (in module keypoint_moseq.viz)
plot_pcs() (in module keypoint_moseq.viz)
plot_pcs_3D() (in module keypoint_moseq.viz)
plot_poses_3D() (in module keypoint_moseq.viz)
plot_progress() (in module keypoint_moseq.viz)
plot_scree() (in module keypoint_moseq.viz)
plot_similarity_dendrogram() (in module keypoint_moseq.viz)
plot_syllable_frequencies() (in module keypoint_moseq.viz)
plot_trajectories() (in module keypoint_moseq.viz)
plot_trajectories_3D() (in module keypoint_moseq.viz)
print_dims_to_explain_variance() (in module keypoint_moseq.util)
R
reindex_by_bodyparts() (in module keypoint_moseq.util)
reindex_syllables_in_checkpoint() (in module keypoint_moseq.io)
S
sample_error_frames() (in module keypoint_moseq.calibration)
sample_instances() (in module keypoint_moseq.util)
save_annotations() (in module keypoint_moseq.calibration)
save_hdf5() (in module keypoint_moseq.io)
save_keypoints() (in module keypoint_moseq.io)
save_params() (in module keypoint_moseq.calibration)
save_pca() (in module keypoint_moseq.io)
save_results_as_csv() (in module keypoint_moseq.io)
setup_project() (in module keypoint_moseq.io)
StopResampling
syllable_similarity() (in module keypoint_moseq.util)
U
update_config() (in module keypoint_moseq.io)
update_hypparams() (in module keypoint_moseq.fitting)
W
write_video_clip() (in module keypoint_moseq.viz)
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